R packages

poppr: An R package designed for analysis of populations with mixed modes of sexual and clonal reproduction.

A primer on how to use poppr can be found here.

vcfR: A package to manipulate and visualize VCF data in R.

metacoder: An R package for metabarcoding research planning and analysis

Other

The documentation below was prepared for worshops and R pacakges we wrote:

1. Reproducible Science in R
2. Population Genetics in R
3. Documentation for graphing heat trees using MetacodeR